Single run of TimeXNet from command lineTimeXNet can be run once from command line using this option. The program can be executed as follows: java –classpath [full installation directory]/timexnet.jar timexnet.NetPath [input network] [initial gene list] [intermediate gene list] [late gene list] [gamma1] [gamma2] [output directory] [glpsol location] It is necessary to specify the fully qualified path where the jar file is installed in order to run TimeXNet. "glpsol location" is an optional parameter. |
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Input parametersThe input parameters must be given in the specified order.
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Output filesTimeXNet generates the following output files:
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Human Genome Centre, Institute of Medical Science, University of Tokyo |